Abstract
Annual Review of Biophysics and Biomolecular Structure
Vol. 29:
183-212
(Volume publication date June 2000)
(doi:10.1146/annurev.biophys.29.1.183)
DNA RECOGNITION BY Cys2His2 ZINC FINGER PROTEINS Scot A. Wolfe Lena Nekludova and Carl O. PaboDepartment of Biology, 68-580, Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139; e-mail: pabo@mit.edu ▪ Abstract Cys2His2 zinc fingers are one of the most common DNA-binding motifs found in eukaryotic transcription factors. These proteins typically contain several fingers that make tandem contacts along the DNA. Each finger has a conserved ββα structure, and amino acids on the surface of the α-helix contact bases in the major groove. This simple, modular structure of zinc finger proteins, and the wide variety of DNA sequences they can recognize, make them an attractive framework for attempts to design novel DNA-binding proteins. Several studies have selected fingers with new specificities, and there clearly are recurring patterns in the observed side chain–base interactions. However, the structural details of recognition are intricate enough that there are no general rules (a “recognition code”) that would allow the design of an optimal protein for any desired target site. Construction of multifinger proteins is also complicated by interactions between neighboring fingers and the effect of the intervening linker. This review analyzes DNA recognition by Cys2His2 zinc fingers and summarizes progress in generating proteins with novel specificities from fingers selected by phage display. Most recent citing papers (via CrossRef)Post-acclimation transcriptome adjustment is a major factor in freezing tolerance of winter wheat Functional & Integrative Genomics (2009) Assessment of the optimization of affinity and specificity at protein-DNA interfaces Nucleic Acids Research 37(10):e73-e73 (2009) The C. elegans Snail homolog CES-1 can activate gene expression in vivo and share targets with bHLH transcription factors Nucleic Acids Research 37(11):3689-3698 (2009) Zn finger-based direct detection system for PCR products of Salmonella spp. and the Influenza A virus Biotechnology Letters 31(5):725-733 (2009) Spermatogenesis-related ring finger gene ZNF230 promoter: identification and functional analysis Molecular Biology Reports 36(5):1187-1193 (2009)
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