Abstract
Annual Review of Plant Biology
Vol. 57:
19-53
(Volume publication date June 2006)
(doi:10.1146/annurev.arplant.57.032905.105218)
First published online as a Review in Advance on January 30, 2006MicroRNAs AND THEIR REGULATORY ROLES IN PLANTS Matthew W. Jones-Rhoades,1 David P. Bartel,1 and Bonnie Bartel21Whitehead Institute for Biomedical Research, Department of Biology, Massachusetts Institute of Technology, and Howard Hughes Medical Institute, Cambridge, Massachusetts 02142; email: dbartel@wi.mit.edu 2Department of Biochemistry and Cell Biology, Rice University, Houston, Texas 77005; email: bartel@rice.edu Abstract MicroRNAs (miRNAs) are small, endogenous RNAs that regulate gene expression in plants and animals. In plants, these 21-nucleotide RNAs are processed from stem-loop regions of long primary transcripts by a Dicer-like enzyme and are loaded into silencing complexes, where they generally direct cleavage of complementary mRNAs. Although plant miRNAs have some conserved functions extending beyond development, the importance of miRNA-directed gene regulation during plant development is now particularly clear. Identified in plants less than four years ago, miRNAs are already known to play numerous crucial roles at each major stage of development—typically at the cores of gene regulatory networks, targeting genes that are themselves regulators, such as those encoding transcription factors and F-box proteins. Terms and Definitions Argonaute (AGO) proteins: members of a protein family that contain a PAZ small RNA-binding domain and a Piwi RNase H-like domain Dicer-like (DCL) proteins: RNaseIII-like enzymes that process siRNAs from long double-stranded RNA precursors or miRNAs from local stem-loop secondary structures of primary transcripts MicroRNA (miRNA): 20- to 24-nucleotide silencing RNA processed from a stem-loop region of a longer transcript by Dicer-like enzymes MicroRNA* (miRNA*): the non-miRNA strand of a miRNA duplex generated by a Dicer-like enzyme from a miRNA stem-loop precursor RNA-induced silencing complex (RISC): originally defined as the ribonucleoprotein complex that cleaves messenger RNAs during RNAi, RISC is now frequently used to refer to any silencing complex that includes an Argonaute protein and an siRNA or miRNA guide strand RNA interference (RNAi): the phenomenon by which exogenous double-stranded RNA directs the post-transcriptional silencing of homologous genes Small interfering RNA or short interfering RNA (siRNA): silencing RNA, typically 20 to 24 nucleotides in length, processed from long double-stranded RNA by Dicer-like enzymes Trans-acting siRNA (ta-siRNA): siRNA that negatively regulates mRNA distinct from and unrelated to the locus from which the siRNA is encoded Most recent citing papers (via CrossRef)Gene silencing of mannose 6-phosphate reductase in the parasitic weed
Orobanche aegyptiaca
through the production of homologous dsRNA sequences in the host plant Plant Biotechnology Journal 7(6):487-498 (2009) Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress Plant Molecular Biology 70(4):385-401 (2009) Ectopic expression of miR396 suppresses
GRF
target gene expression and alters leaf growth in
Arabidopsis Physiologia Plantarum 136(2):223-236 (2009) RNA-directed DNA methylation requires an AGO4-interacting member of the SPT5 elongation factor family EMBO reports 10(6):649-654 (2009) Copper homeostasis New Phytologist 182(4):799-816 (2009)
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