First published online as a Review in Advance on March 14, 2006Cold-Adapted Enzymes
Abstract By far the largest proportion of the Earth's biosphere is comprised of organisms that thrive in cold environments (psychrophiles). Their ability to proliferate in the cold is predicated on a capacity to synthesize cold-adapted enzymes. These enzymes have evolved a range of structural features that confer a high level of flexibility compared to thermostable homologs. High flexibility, particularly around the active site, is translated into low-activation enthalpy, low-substrate affinity, and high specific activity at low temperatures. High flexibility is also accompanied by a trade-off in stability, resulting in heat lability and, in the few cases studied, cold lability. This review addresses the structure, function, and stability of cold-adapted enzymes, highlighting the challenges for immediate and future consideration. Because of the unique properties of cold-adapted enzymes, they are not only an important focus in extremophile biology, but also represent a valuable model for fundamental research into protein folding and catalysis.
Acronyms
CD : circular dichroism
DSC : differential scanning calorimetry
TS# : transition state
TUG-GE : transverse urea-gradient gel electrophoresis
Terms and Definitions
AHA : the (-amylase from Pseudoalteromonas haloplanktis is a multidomain, monomeric, Ca2+- and Cl−-dependent enzyme
Cold denaturation : the unfolding of enzyme structure, which occurs at temperatures below T max
Conformational stability : Gibbs free-energy (ΔG) change between folded and unfolded states of a protein, which are in equilibrium
Dynamic flexibility : a measure of how rapidly structures within an enzyme interconvert between conformations
Flexibility : the sum of the fluctuations of interconverting protein conformations
Kinetic stability : a measurement of how rapidly an enzyme unfolds irreversibly at a given temperature
Stability curve : plot of ΔG versus T. The temperature at the peak of the stability curve is T max
Static flexibility : the number and structural variety of possible enzyme conformations
Thermodynamic activation parameter (#) : a measure of the energy between the ground state and the transition state