Abstract
Annual Review of Biophysics and Biomolecular Structure
Vol. 36:
171-190
(Volume publication date June 2007)
(doi:10.1146/annurev.biophys.36.101106.101451)
First published online as a Review in Advance on February 28, 2007High-Resolution, Single-Molecule Measurements of Biomolecular Motion William J. Greenleaf,1 Michael T. Woodside,3,4 and Steven M. Block1,21Department of Applied Physics and 2Department of Biological Sciences, Stanford University, Stanford, California 94305–5030; email: sblock@stanford.edu 3National Institute for Nanotechnology, National Research Council of Canada, Edmonton AB, T6G 2V4, Canada 4Department of Physics, University of Alberta, Edmonton, AB, T6G 2G7, Canada Abstract Many biologically important macromolecules undergo motions that are essential to their function. Biophysical techniques can now resolve the motions of single molecules down to the nanometer scale or even below, providing new insights into the mechanisms that drive molecular movements. This review outlines the principal approaches that have been used for high-resolution measurements of single-molecule motion, including centroid tracking, fluorescence resonance energy transfer, magnetic tweezers, atomic force microscopy, and optical traps. For each technique, the principles of operation are outlined, the capabilities and typical applications are examined, and various practical issues for implementation are considered. Extensions to these methods are also discussed, with an eye toward future application to outstanding biological problems. Acronyms and Definitions AFM: atomic force microscope F1-ATPase: the component of the F1F ATP synthase that reversibly synthesizes ATP from ADP using a proton motive force Flagellar motor: the molecular motor complex responsible for the rotation of flagella in motile bacteria and archaea Force clamp: a device or method capable of maintaining a constant external load on an object, such as a macromolecule, as it moves FRET: fluorescence resonant energy transfer Hairpin: a segment of a single-stranded nucleic acid, such as DNA or RNA, with a self-complimentary sequence capable of folding back and annealing to itself to form a duplex region Motor protein: a macromolecule that converts chemical energy (e.g., from NTP hydrolysis or proton motive force) into mechanical motion Position-sensing detector: device that measures the average position of incident light Ribozyme: a catalytically active molecule of RNA RNA polymerase (RNAP): a DNA-directed polymerase responsible for RNA transcription Titin: a protein that is a major constituent of vertebrate striated muscle and thought to guide the development of muscle thick filaments, as well as to provide passive elasticity in muscle fibers Most recent citing papers (via CrossRef)Viscous drag effect in the flexural rigidity and cantilever stiffness of bio- and nano-filaments measured with the shooting-bead method Physical Review E 80(1) (2009) Optical Tweezers Study of Topoisomerase Inhibition Small 5(11):1269-1272 (2009) Single-molecule mechanics: New insights from the escape-over-a-barrier problem Proceedings of the National Academy of Sciences 106(22):8795-8796 (2009)  Single-Molecule Studies of the Neuronal SNARE Fusion Machinery Annual Review of Biochemistry 78:903-928 (2009) Optical traps for single molecule biophysics: a primer Laser & Photonics Review 3(1-2):203-220 (2009)
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