Abstract
Annual Review of Biophysics
Vol. 37:
289-316
(Volume publication date June 2008)
(doi:10.1146/annurev.biophys.37.092707.153558)
The Protein Folding Problem Ken A. Dill,1,2 S. Banu Ozkan,3 M. Scott Shell,4 and Thomas R. Weikl51Department of Pharmaceutical Chemistry, University of California, San Francisco, California 94143 email: dill@maxwell.ucsf.edu 2Graduate Group in Biophysics, University of California, San Francisco, California 94143 3Department of Physics, Arizona State University, Tempe, Arizona 85287; email: banu.ozkan@asu.edu 4Department of Chemical Engineering, University of California, Santa Barbara, California 93106; email: shell@engineering.ucsb.edu 5Max Planck Institute of Colloids and Interfaces, Department of Theory and Bio-Systems, 14424 Potsdam, Germany; email: thomas.weikl@mpikg.mpg.de The “protein folding problem” consists of three closely related puzzles: (a) What is the folding code? (b) What is the folding mechanism? (c) Can we predict the native structure of a protein from its amino acid sequence? Once regarded as a grand challenge, protein folding has seen great progress in recent years. Now, foldable proteins and nonbiological polymers are being designed routinely and moving toward successful applications. The structures of small proteins are now often well predicted by computer methods. And, there is now a testable explanation for how a protein can fold so quickly: A protein solves its large global optimization problem as a series of smaller local optimization problems, growing and assembling the native structure from peptide fragments, local structures first. Most recent citing papers (via CrossRef)Myosin VI: an innovative motor that challenged the swinging lever arm hypothesis Nature Reviews Molecular Cell Biology 11(2):128-137 (2010) Protein folding in membranes Cellular and Molecular Life Sciences (2010) Directed transport as a mechanism for protein folding in vivo The Journal of Chemical Physics 132(3):035103 (2010) Free-energy function based on an all-atom model for proteins Proteins: Structure, Function, and Bioinformatics 77(4):950-961 (2009) Refolding dynamics of stretched biopolymers upon force quench Proceedings of the National Academy of Sciences 106(48):20288-20293 (2009)
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