Acronyms and Definitions
AS: acetosyringone
chv genes: chromosomal loci of Agrobacterium tumefaciens required for virulence
Coupling protein: inner membrane component of a type IV secretion system that typically contains an ATP binding motif and recruits substrates to the T4SS
LKR: linker, kinase, and receiver domains (of VirA)
LZ: leucine zipper
Opine: sugar–amino acid conjugates synthesized by A. tumefaciens–transformed plant cells that can be metabolized by A. tumefaciens cells carrying a Ti plasmid
rat mutants: mutants in Arabidopsis thaliana plants that confer a phenotype of resistance to transformation by A. tumefaciens.
Response regulator: transcription factor component of a two-component regulatory system that binds to DNA and activates transcription of target genes upon phosphorylation by a sensor kinase
Sensor kinase: inner membrane component of a two-component regulatory system that, in response to signals, generally acts to phosphorylate a response regulator
T-pilus: surface appendage of A. tumefaciens composed of proteins encoded in the virB region of the Ti plasmid and proposed to be involved in physical interaction with plant cells
Transferred DNA (T-DNA): region of the Ti plasmid of A. tumefaciens between 23 bp direct repeats processed into single-stranded form and transported into host plant cells during infection
TrIP: transferred DNA immunoprecipitation
Tumor-inducing (Ti) plasmid: large plasmid found in virulent strains of A. tumefaciens that encodes several of the proteins required for tumorigenesis
Type IV secretion system (T4SS): multisubunit transporter that transports protein and DNA across a bacterial cell envelope into a recipient cell
vir genes: genetic loci on the Ti plasmid of A. tumefaciens that encode proteins necessary to recognize plant signals as well as to process and transfer the T-DNA into host cells
VirD2-T-strand: transport competent form of the T-DNA that is single stranded and covalently bound by VirD2 at the 5′ end