First published online as a Review in Advance on May 8, 2006The Structural and Functional Role of RNA in Icosahedral Virus Assembly
Anette SchneemannDepartment of Molecular Biology, The Scripps Research Institute, La Jolla, California 92037; email:
aschneem@scripps.edu Abstract Despite tremendous advances in high-resolution structure determination of virus particles, the organization of encapsidated genomes and their role during assembly are poorly understood. This article summarizes recent insights from structural, biochemical, and genetic analyses of icosahedral viruses that contain single-stranded, positive-sense RNA genomes. X-ray crystallography of several viruses in this category has provided tantalizing glimpses of portions of the packaged nucleic acid, contributing crucial information on how the genome might be folded within the virion. This information combined with theoretical considerations and data from molecular approaches suggests mechanisms by which coat proteins interact with genomic RNA to shape it into a conformation that is compatible with the geometry of the virion. It appears that RNA, in addition to its function as a repository for genetic information, plays an important structural role during assembly and can on occasion override the ability of the coat protein to form a particle with defined icosahedral symmetry.
Terms and Definitions
Icosahedral virus: viruses whose capsids exhibit the symmetry of an icosahedron
Nucleocapsid: core of a structurally complex virus particle containing the viral genome and a layer of protective protein
Satellite virus: a virus whose multiplication depends on the presence of a helper virus in the same cell
Single-stranded positive-sense RNA [(+)ssRNA]: a single-stranded RNA molecule that has the same polarity as mRNA
T=3: T is the triangulation number, which refers to the subtriangulation of the 20 facets of an icosahedron
Acronyms
A: adenine
BMV: Brome mosaic virus
BPMV: Bean pod mottle virus
CPMV: Cowpea mosaic virus
FHV: Flock House virus
HRV14: human rhinovirus 14
PaV: Pariacoto virus
Pu: purine
Py: pyrimidine
RCNMV: Red clover necrotic mosaic virus
STMV: Satellite tobacco mosaic virus
TMV: Tobacco mosaic virus